Protein Info for LRK54_RS02685 in Rhodanobacter denitrificans FW104-10B01

Annotation: Maf family nucleotide pyrophosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 TIGR00172: septum formation protein Maf" amino acids 1 to 187 (187 residues), 166.6 bits, see alignment E=2.1e-53 PF02545: Maf" amino acids 4 to 188 (185 residues), 195.5 bits, see alignment E=3.5e-62

Best Hits

Swiss-Prot: 61% identical to NTPPA_XANCP: dTTP/UTP pyrophosphatase (XCC2610) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K06287, septum formation protein (inferred from 70% identity to psu:Psesu_2228)

Predicted SEED Role

"Septum formation protein Maf" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>LRK54_RS02685 Maf family nucleotide pyrophosphatase (Rhodanobacter denitrificans FW104-10B01)
MSPRLYLASQSPRRHQLLEQLGADFVVLDVDVPEQRAPGESPRDYVSRVARDKACAGLAA
LAHAGDALVLGADTEVVLDDDEVFGKPRDAADAAAMLRRLSGRTHAVVSAVWLVGSGGER
CEVCVSQVRFATLDEPAIAAYVATGEPFGKAGAYAIQGRGAAMVEHLDGSYSGVMGLPLF
ETARLLRRGGISPAG