Protein Info for LRK54_RS02630 in Rhodanobacter denitrificans FW104-10B01

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 255 to 276 (22 residues), see Phobius details amino acids 288 to 321 (34 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 262 (240 residues), 102.6 bits, see alignment E=2.2e-33 PF00083: Sugar_tr" amino acids 50 to 197 (148 residues), 84.1 bits, see alignment E=9.9e-28 amino acids 242 to 399 (158 residues), 44.5 bits, see alignment E=1e-15

Best Hits

KEGG orthology group: K08178, MFS transporter, SHS family, lactate transporter (inferred from 55% identity to rlg:Rleg_2477)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>LRK54_RS02630 MFS transporter (Rhodanobacter denitrificans FW104-10B01)
MSLLAPLRELDTVQRHTVLASFLGWTLDAFDYFLLTFVIVTVAKEFDVGTAQITYALFLT
LAARPLGALLFGRLADRFGRRPILMLDVILFSLFEFATAFASSLTALLVLRFLFGVAMGG
EWGIGASLAMESIPAKARGAVSGLLQSGYPCGFFLAALANWLLVDHIGWRGLFVVGALPA
LLVLYIRRKVPESAVWQEGARAAKRPGLREAMRGHWKLAIYLMLLMMAFNMFSHGSQDMY
HTFEEVNLHLPTGSATAFVLVALLNLGALAGGLYFGALSERIGRRKAMMIAALLAIPVIP
LWMYGGSLILLGVGAFLIQVMVQGAWGVVPSHLNELSPAALRGTLPGFAYQMGNLLAAVT
ATAQTWLAQRHGGDFAFAMALWMVLVALLLTLLLWLGPEARGVGFGHRES