Protein Info for LRK54_RS02195 in Rhodanobacter denitrificans FW104-10B01

Annotation: pilus assembly protein PilY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1252 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 700 to 1055 (356 residues), 133.6 bits, see alignment E=4.8e-43

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1252 amino acids)

>LRK54_RS02195 pilus assembly protein PilY (Rhodanobacter denitrificans FW104-10B01)
MNNTSRLHSKPGSFLGRLLTTGFSLWLLGVAFSPALAATPSPAVDQSPLIIQKPLPPNIV
LMLDDSGSMAWDVMPDWNYLSSTSADALVNSDVNGLYFTPTVTYVPPLKADGSSYPDAAF
DSALVDGFNSSSTKVDLSTYDGSSDDSRNGQIRSDIAYSVGAGSGGYGASTCSSYDGTSQ
RYPGYCYASYNNGSSDFSYNGNYYYYRCSSHQDRYNADGKCYPHSFFTYTKRDSSGNYTR
YYVAKTVGDCAAASLAATVCDESAVTRQNVANWFSYYHTRILMAKSGVMDAFSSVDAAYR
IGFGSINGNNDANLPTPNAVYGSNNNKIAQVVPFDSGAAGTQKASFWKWVAGAKANNSTP
LRRSLDAVGQYYQAAQPWQTSASDTTELACRQSYTILTTDGFWNGGTPSSIGNVDNTTKG
PITGPNNQPFTYNPALPYSDDQSDTLADVAMKYWVNDLRTGSVNEVPTSKEDPAFWQHMV
TFTLGLGFDPVYSAGGATIPVDQVFAWANGDSSQAISGFSWPTPSKDNITNIADLAHAAV
NGHGGFASAKTPGEFSDALKKALQRASDRVGTGASLAANSTQLKTGAFAYQANYYTGNWK
GDLKAIAVNPNNGTLALTPTWTAAGKLPAASDRKIYTYNPSVASVAAVAFTDPATLASAE
QTALGADATAQQNMINYLRGDASLEKPKTGGIYRTRETALGDIVNSQPVYVGQPEANQFV
GQAFTGSDSFGSYAATTRQGLIFVSANDGMLHAFNADTGAEVFAYLPAAVITSGLSSLSN
PDYGSTSVPHQFFNDGELTVADVYFGSAWHTVAVGTTGRGTAKAIYALDVTDPTNITLLW
ERSAGDGKSGADSIGQMIGKPVIAQTNVAANDTTGDNNWSVLIGNGYNSKNGTAALLQFA
IKDGTLSVHATDSATANGLAAPAVWMGDLSVGISTVAYAGDAQGRVWSFGLNTATTRGNT
TTYAATPTSTGSKLYTAMDAATGGTAQPITGGMLVGKNPLTQDLWVFFGTGQYLSSTDLT
STATQSWYGLIVKSATSGLAVDGTKNRGNLMQRSIIAETPGTPEVLNADGTVNTAAIAPA
RAVTAAPSTSDMAGKSGWYIDLLSPTSSTDSTTGNVTYTPNQTAQGERIVTPNQFQGNQL
LATTRIPQATDLCNPSGRGWIMAVDPFTGTNPKSSFFDLNGDGLINQPADYIMVNGVAVA
TSGMGFNSLPNNPIFMGGSMLVSFDNGSATSIKTSGTSGTLQRVSWRELIAQ