Protein Info for LRK54_RS02065 in Rhodanobacter denitrificans FW104-10B01

Annotation: GNAT family N-acetyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 transmembrane" amino acids 48 to 70 (23 residues), see Phobius details PF13302: Acetyltransf_3" amino acids 12 to 147 (136 residues), 107.2 bits, see alignment E=5.7e-35

Best Hits

KEGG orthology group: None (inferred from 60% identity to smt:Smal_2642)

Predicted SEED Role

"acetyltransferase, GNAT family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (180 amino acids)

>LRK54_RS02065 GNAT family N-acetyltransferase (Rhodanobacter denitrificans FW104-10B01)
MDLDSLRIETERLILRPPRMQDFDAYAANMADAEAARFIGGQQARAAAWRGFLSLAGAWM
IQGFSMFSVIEKRSGQWIGRLGPWHPADWPGTEVGWGLARSAWGKGYALEGCVAAIDWTF
DQLGWSEMIHSIHPDNRASQALAQRLGSSCRGPGKLPAPYEDSPTEIWVQTREQWRRRRA