Protein Info for LRK54_RS01820 in Rhodanobacter denitrificans FW104-10B01

Annotation: DeoR/GlpR family DNA-binding transcription regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 PF08279: HTH_11" amino acids 15 to 56 (42 residues), 25.2 bits, see alignment 1.9e-09 PF08220: HTH_DeoR" amino acids 15 to 66 (52 residues), 49 bits, see alignment E=6.3e-17 PF00455: DeoRC" amino acids 82 to 239 (158 residues), 151.4 bits, see alignment E=3.3e-48

Best Hits

Swiss-Prot: 36% identical to GLPR_SHIFL: Glycerol-3-phosphate regulon repressor (glpR) from Shigella flexneri

KEGG orthology group: None (inferred from 54% identity to bge:BC1002_4353)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (265 amino acids)

>LRK54_RS01820 DeoR/GlpR family DNA-binding transcription regulator (Rhodanobacter denitrificans FW104-10B01)
MAKPPLPGELLPQERQHEILQRLRSRGRVVAAELAAELAASEDSIRRDLRELAAQGLCRR
VYGGALPLSAAVAPLQQRRSEQVGRKLALARKAVSLVREGQVLLIDAGSTNAAIAAALPE
RMNLTVITNAPDIALALIEREGFEILLLGGRIDPRIGGAVGAQTLQELQRVRADLCFPGA
CAIDADSGLWGFDSEESLQKRAMIEASGETVVVATSDKLGTVATHRIAPIAEVQYLVVEH
AVGRPVRAAFSARGVSVHRAEAAAD