Protein Info for LRK54_RS01705 in Rhodanobacter denitrificans FW104-10B01

Annotation: fimbrial protein FimV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 799 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 505 to 524 (20 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 203 to 275 (73 residues), 81.6 bits, see alignment E=2.8e-27 TIGR03504: FimV C-terminal domain" amino acids 755 to 798 (44 residues), 66.7 bits, see alignment 1.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (799 amino acids)

>LRK54_RS01705 fimbrial protein FimV (Rhodanobacter denitrificans FW104-10B01)
MNRSLKLSMLIVLALGSSQAMAVDLGQIQVKSALGQPLLAEIPLHPDSPAELQGLTVQLA
SSEEFARAGIAGGRTAIPLHFSVANAGAGHSVIRITSSAPVDDPFLDLLIEVNGKAGKSV
REYAILLDPPGASAAAAAPTAPAAPATPAPSQPAPHTRAPVTAPVAAQPKPAAPAPAPAP
IQKPKPAAPALNNGQYGPVEHGQTLSSIARSVAPAGVDAQQMMLALQQANPDAFYRNNIN
ALKSGSVLRVPTSAEAQAMTIAAAVAEVRRQNSDWRAGVPGKPTVVADAATRASSTATPA
RAPDAGDRLALVPAKEGSSAGTRGGGAGDKSSVGLRQDLLRTQESLASLQQQSADLKGRL
KDLADINSKNERLLSLKDNEIAELQAKLATARKAAGMPPAATPVAAASSAKTTPVAAAAP
TEKLETATAMASTAAGVSAAPVAAGSTAASTPVAASSLAGAPAHGASVVTTPIATPAPAK
PVEKPAAMHPASVPATLEQPWYMQTWAWAAAAGAVVLLILLAMLGRRRKPAADAPKAASS
LADRFGSAPAAGQDLPGDDVDQDELLDQLAEHPDDIGLHLELVTLYYSRRDVEHFEAAAE
AMHAHITDPQQDEWQDVLHMGEDLVPGHPLFDHHAESAVPDDAEARGGFNIDDYADKADA
PTVVSSMPPPLPPGASKPVSEYNFNFDLTRAVVEPPARPAPAADDATVAAPLAASRPSAP
AEPVSSWHFDEEDSTPLAADGGHDLGEFNDDPVDTKLDLARAYIDMGDAEGARAMLGEVV
KEGSQMQKDTAKRLLDSLH