Protein Info for LRK54_RS01415 in Rhodanobacter denitrificans FW104-10B01

Annotation: DUF3772 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 802 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 210 to 229 (20 residues), see Phobius details amino acids 250 to 272 (23 residues), see Phobius details amino acids 284 to 309 (26 residues), see Phobius details amino acids 329 to 346 (18 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 401 to 456 (56 residues), see Phobius details amino acids 487 to 509 (23 residues), see Phobius details amino acids 534 to 556 (23 residues), see Phobius details amino acids 577 to 598 (22 residues), see Phobius details amino acids 605 to 630 (26 residues), see Phobius details PF12607: DUF3772" amino acids 132 to 193 (62 residues), 55.4 bits, see alignment 4.2e-19 PF00924: MS_channel_2nd" amino acids 623 to 689 (67 residues), 75.9 bits, see alignment E=2.1e-25

Best Hits

KEGG orthology group: None (inferred from 44% identity to cti:RALTA_B1546)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (802 amino acids)

>LRK54_RS01415 DUF3772 domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MPTLLRCLLLLLLTFGSAASLAQSSDPSSTAAPAATPAQTLDQLGSQLDTVKAALKDKKP
DTPLADLRTTALGVQDQARQLAADLAPQMTALQAQLAVLGPTPAKGTPPEAPEVAAQRRK
LDKAQADLDAQIKQAQLLGQNATQLAAQISGLRNDEFQARLASRTATPFSRTFWADPVRA
FPDDVARLKRLGARFADAMAQAWQPPNRQPLAWCLIAAALLLGGGRWVLERLLLGLATRH
VPDGHLRRSAMAVAVALAAVLTTGLAAQLAYLGLNWNDILDDDLAALATSVVGLVCFAAY
VTGLGRALLSVPRPSWRLPALSDLAAQRLHLFPWLLAAAALLFGLLDRTSRAIGTSLPAT
VATRGLFALVISGLIGLALLRLRRARREQAASGAEPEHRPVWMGLLSAAATLGVAVSWLG
VATGFIALAFFVAVQMLWVGVIVATVYLLIHLLTDLIDTLLSPRGRSGQRLQATFQLAPH
TLEQTATLLAGVCRVGLVLLALATVLTPFGAGPKDLLTSAEQTLGSFRLGDLAINPGSIF
SAALVLVAGLFVLRTLKRWLREQLLPKSTMEPGMQDSIVTLLGYLGGMLVFVLTLAALQV
DLKSITWIVSALSVGIGFGLQAIVQNFISGLILLVERPVKVGDWVSLSSDVEGDIRRINV
RATEIQMWDRSTVIVPNSQLITQNVRNVTLANAQGRVQIKLPMPLDTDAGKVRELVLGIL
RAHHGTLAAPAPYVQLENVNAGVMTFNCVAYVGGPREVGGVKSELLFEILERLRRERLPM
TSPQSMLVRTLPPLPDEDECTG