Protein Info for LRK54_RS00680 in Rhodanobacter denitrificans FW104-10B01

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 73 to 89 (17 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 12 to 185 (174 residues), 219.3 bits, see alignment E=1.5e-69 PF03741: TerC" amino acids 14 to 184 (171 residues), 165.8 bits, see alignment E=4.3e-53

Best Hits

KEGG orthology group: None (inferred from 55% identity to sgy:Sgly_3198)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>LRK54_RS00680 TerC family protein (Rhodanobacter denitrificans FW104-10B01)
MNFTAPDFFSGLLAIVLLDLVLAGDNAIVIAMAASRLPRELQKKAVFWGTFGAVAVRFAL
TAVVVYLLKLPGLMLAGGVLLLPIAWKLLNHGDEHGPDIKAGNTFWSALRTIIAADALMG
LDNVLAIAGASKGHLLLVILGLLISVPLVVWGSTLILKLIDRFPIIMYIGAAAIAITAGR
MIAHDHLLSGWFDAHAWAKYALDALAVIGICGGGWLVQRRRQRLKLSVS