Protein Info for JOY50_RS20255 in Pseudomonas sp. BP01

Name: fdnG
Annotation: formate dehydrogenase-N subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1022 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR01553: formate dehydrogenase-N alpha subunit" amino acids 3 to 1021 (1019 residues), 1461.2 bits, see alignment E=0 PF04879: Molybdop_Fe4S4" amino acids 45 to 104 (60 residues), 57.8 bits, see alignment 1.3e-19 PF00384: Molybdopterin" amino acids 108 to 592 (485 residues), 107 bits, see alignment E=1.6e-34 PF01568: Molydop_binding" amino acids 899 to 1014 (116 residues), 47.1 bits, see alignment E=3.2e-16

Best Hits

Swiss-Prot: 66% identical to FDOG_ECOLI: Formate dehydrogenase-O major subunit (fdoG) from Escherichia coli (strain K12)

KEGG orthology group: K00123, formate dehydrogenase, alpha subunit [EC: 1.2.1.2] (inferred from 70% identity to bav:BAV3142)

MetaCyc: 63% identical to formate dehydrogenase N subunit alpha (Escherichia coli K-12 substr. MG1655)
FORMATEDEHYDROG-RXN [EC: 1.17.5.3]

Predicted SEED Role

"Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing" (EC 1.2.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.2

Use Curated BLAST to search for 1.17.5.3 or 1.2.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1022 amino acids)

>JOY50_RS20255 formate dehydrogenase-N subunit alpha (Pseudomonas sp. BP01)
MDLNRRQFFKVAAVGLGGSSLAALGMAPTPAFAEQVRHFKLAHTKEARNTCPYCSVGCGL
IMYSQGDAGKNVKQSIIHIEGDADHPVNRGTLCPKGAGLLDFIHSPSRLQYPEVRKPGSK
EWVRVSWDEALDRVADLMKQDRDANFIEKNALGQTVNRWLTTGFLAASAASSEAGYLTHK
VVRATGMLGFDNQARVUHGPTVASLAPTYGRGAMTNHWSDIANANLVLVMGGNAAEAHPC
GFKWVTEAKAHNKARLIVVDPRFTRTASVADYYAPIRTGTDIAFMGGLINYLLSTDKIQH
EYVRNYTDVSFIVKESYGFEDGLFSGYDEAKRVYADKSGWGYELGEDGFAKVDPTLQHPR
CVFQLMKQHYSRYTPELASMICGMPQDAMMKVWEEIATCSAPGKTMTILYALGWTQHSIG
AQIIRSAAMVQLLLGNVGMPGGGVNALRGHSNIQGLTDLGLLSNSLPGYLTLAGDAEQDY
ATYIDKRASKPLRPGQLSYWQNYGKFHVSLMKAWYGANATAENNWGYDWLPKLDVPAYDV
LRMFEMMSQGKVNGYVCQGFNPIAALPDKNRVTAALGKLKWLVIMDPLATETSEFWRNAG
PFNDVDTASIQTEVIRLPTTCFAEEDGSLVNSSRWLQWHWKGADGPGETRTDVQIMSELF
LRMRQRYQAEGGAYPDAMMNISWPYKIPEEPSPEELAKEMNGWAVTDVTDATGATLKAGQ
QLSGFGQLKDDGSTASGCWIFAGSWTEQGNQMARRDNSDPYGMHQVQNWAWAWPANRRIL
YNRASSDPQGKPWDPEKKRLVWWSGKAWTGTDVPDFKVDSPPEAGMNPFIMNPEGVARFF
AIDKMAEGPFPEHYEPFETPIGINPLHPQNKKVVSNPAGRIFDSVWDTLGTHDEFPYAAT
TYRLTEHFHFWSKHCRLNAIAQPEQFVEIGEVLANEKGIKAGDRVRVSSKRGHIDAVAVV
TKRIRPLQVNNQTVHQIGIPLHWGFTGATRHGYLTNTLVPFLGDGNTQTPESKSFLVKVE
KL