Protein Info for JOY50_RS05885 in Pseudomonas sp. BP01

Annotation: translocation/assembly module TamB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1224 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF04357: TamB" amino acids 899 to 1224 (326 residues), 195 bits, see alignment E=1.3e-61

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 94% identity to ppg:PputGB1_2889)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1224 amino acids)

>JOY50_RS05885 translocation/assembly module TamB domain-containing protein (Pseudomonas sp. BP01)
MKRVIKYILLGLFGVVASLGLALGLLLGTEAGSRWALGKVPGLEVADFQGRLAGSWQASM
LRWADGGSTVEVQAPLLAWSPACLMRATLCIDQLQAQRIDMAFAPSAEPAESGPLQLPSL
RLPLAIELGEVKVGQLRLDGSDLLGDLQLAAHWTGTGMRIDSLHLQRDDLQLNLQGDLQP
EGDWPLELQAQLQLPAIDGKPWQLALTATGELQKTLKLAGASSGYLDATLSGQLQALAEH
LPATLQIRSEAFKPAGSLPDTLQLNQLKLDAKGDLLKGYQLSGTASLPAEQSPIALALSG
LVDSKGARLDALDLTASDTQRVKLQATADWQQGLTADAQLDWQDFPWLRLYPLETPPEVT
LKRFNTQVHYRDGNYQGTFKGDLDGPAGAFSLASPFEGDLAQVQLPQLALTAGQGRAAGS
VAVRFADTLAWDVDLQLSALDPAYWLAELPGTLAGPLRSKGEMKGEMLTLDAQLDLKGRL
RGQPAVFKAEAQGAGQNWTLGALAIQLGDNRINGSGSLQQRLAGRIDLDLPRLGQLWPRL
QGQVKGRLDVAGTLQAPQGTLTLQGQRLAQAENRLQQLDLDARLDNAQRGVIELKATGIH
LGDTALGTLQANGKGDIRQQALTLALDGPQLKLDLGLDGQLSKGDWRGRLASGRIQAGGQ
DWQLQAPARLQRLASGQLDFGAHCWRSGQASLCGDDQRLAPEPRLRYHLKQFPLDSLAQW
LPKDFAWQGLLNADINLDIPASGPKGNIVIDASGGTLRVRDKGRWVDFPYQALRVDSTLA
PRRIDTRLAFRGERLGELSVNTRLDPLGKNKPLSGDFRLAGLDLAVARPFVPMVERLTGQ
LNGSGRLSGTLLAPQVNGSLMLSGGEVSGAELPASLEDLSLQALIAGEQVQLNGSWRSGD
AGRGQLSGNLTWGQALGMDLRLQGQQLPVTVEPYATLEVAPDLALRLVDDKLAVTGKVLV
PKGKITVRELPPSTVKVSDDTVIVGHQTEEGKPPMAMAMDIDVEVGQDKLSFSGFGLTAN
LLGHVHIGDNLDTRGELSLADGRYRAYGQRLTIRRARLLFAGPIDQPYLDIEAIRTVDDV
IAGIRLSGSAEQPTTKVFSEPAMSQEQALSYLVLGRPLGNSGEDNNMLAEAALGLGLAGS
AGITGSLASSLGIDDFQLDTEGSGNTTSVVASGNITEKLSLRYGVGVFEPANTIALRYKL
SKKVYLEAASGLASSLDIFYKRDF