Protein Info for IKLFDK_27050 in Pseudomonas aeruginosa PA14

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF02899: Phage_int_SAM_1" amino acids 5 to 88 (84 residues), 85.6 bits, see alignment E=2.3e-28 TIGR02224: tyrosine recombinase XerC" amino acids 7 to 293 (287 residues), 362.7 bits, see alignment E=7.8e-113 PF00589: Phage_integrase" amino acids 110 to 279 (170 residues), 157.7 bits, see alignment E=2.6e-50

Best Hits

Swiss-Prot: 100% identical to XERC_PSEA8: Tyrosine recombinase XerC (xerC) from Pseudomonas aeruginosa (strain LESB58)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 98% identity to pap:PSPA7_6023)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>IKLFDK_27050 tyrosine recombinase XerC (Pseudomonas aeruginosa PA14)
MRADLDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARL
HQQGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLL
DGAVEDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVG
KAARQALEAWLPLRAQAAPEDGAVFIGRGGKRLTPRAIQLRVRQAGVRELGQHLHPHMLR
HSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGG
NDP