Protein Info for IKLFDK_10055 in Pseudomonas aeruginosa PA14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 163 to 186 (24 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 230 to 247 (18 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 331 to 354 (24 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details amino acids 437 to 457 (21 residues), see Phobius details PF07690: MFS_1" amino acids 15 to 409 (395 residues), 188.6 bits, see alignment E=8e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to pae:PA2055)

Predicted SEED Role

"Probable MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>IKLFDK_10055 MFS transporter (Pseudomonas aeruginosa PA14)
MTDRAAPSNWMLALLASAQLIIALDATIVFVALPEISRALDFSAQRLQWVVSAYTVAFGG
FLLLGGRATDLLGRRRMYVLGQSLYALASLAGGLAQSELPLILARAVQGLGGALLFPATL
ALIGNHFAEGPARNRALAIWSIASAFGLALGSALGGALTELFGWASIFLVNVPLAGAAAL
LALRLIPADARRQRGRRFDLAGALTVTAGATLLVFALVQGPESGWDAPSVRFGLYLSVPL
LLAFLAIEHYSRDPLMPLRLLGNRNLQVAMLLTAIFMSSYGVQYYFLAIYFQSVYGYSVL
QTGLAFLPATLLCTLGIRVAERLLARHGARATLVAGLLLGALGLGLLAACLPLGRGFLAL
LPAIVILSVGQGMTWTAMWVSAASGVDPAEQGVASGMASMTQQIGGALGLALLVALANAQ
VRGADAASLLASQARGIEWVTALSALLALFGAALALRLRREEPAALQPSRG