Protein Info for IAI47_21595 in Pantoea sp. MT58
Annotation: 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 56% identical to ARNF_ERWT9: Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF (arnF) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)
KEGG orthology group: K12963, undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF (inferred from 91% identity to pva:Pvag_pPag10066)Predicted SEED Role
"Polymyxin resistance protein PmrM" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance )
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (121 amino acids)
>IAI47_21595 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase (Pantoea sp. MT58) MKGYGWVTCSVLLVSAAQLMMRWAMPRLPDVSSLTSLPTVAILPALLLLAGLGAYAVSML CWIRALHYFPLNRVYPLLSLSYVLVWLVAVCLPVFHEAFSWRSLAGVVIIVIGLLCIVVK P