Protein Info for IAI47_21305 in Pantoea sp. MT58

Annotation: AzlC family ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 191 to 216 (26 residues), see Phobius details PF03591: AzlC" amino acids 20 to 155 (136 residues), 98.2 bits, see alignment E=2.7e-32

Best Hits

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_pPag30007)

Predicted SEED Role

"FIG00350115: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>IAI47_21305 AzlC family ABC transporter permease (Pantoea sp. MT58)
MRFPQMQLLDKGVIKAIFLVCLADGIVGLSYGSLASADGFPLWVPLALSTLVLAGASEFL
FIGIVAGGGSPFTAAAAGLLVNARHLPFGIAVKDLVGTGPRGWFGCHIMNDESVVFGISQ
PQLAQRRSAYWLCGIGIGFIWPVSVMTGAAIGQFIPDVSVIGLDAVFPAILIALIFPALR
QRRTRIPATVGALLSLLATPLVPAGMPVLFSLLGLLTWRSRK