Protein Info for IAI47_20860 in Pantoea sp. MT58

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01370: Epimerase" amino acids 6 to 139 (134 residues), 24.4 bits, see alignment E=3.7e-09 PF08659: KR" amino acids 6 to 159 (154 residues), 50.7 bits, see alignment E=4.2e-17 PF00106: adh_short" amino acids 6 to 192 (187 residues), 145.5 bits, see alignment E=2.8e-46 PF13561: adh_short_C2" amino acids 10 to 192 (183 residues), 97 bits, see alignment E=2.8e-31

Best Hits

KEGG orthology group: K07124, (no description) (inferred from 87% identity to rah:Rahaq_1903)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>IAI47_20860 SDR family oxidoreductase (Pantoea sp. MT58)
MKKPSVLITGASAGIGAVYAERFARRGHDLVLVARDKTKLETLAKRLQQEHTISVDVLPA
DLTQAGDLTTVEARLREDAGIGILINNAGIAQSGSFTEQTPDSMEKLIALNVTALTRLAS
VAATRFADAGEGSIVNISSIVGLAPEFAMTVYGATKAFVLFLSQGMNVELSSKGIYIQAV
LPAGTYTEIWNRAGIDITNAPKMMEVGELVDAALAGFDRRELVTIPPLHHAERWDVLDTA
RQGLLSDIRQDEAADRYKTL