Protein Info for IAI47_20420 in Pantoea sp. MT58
Annotation: FAD:protein FMN transferase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 64% identical to APBE2_KLEP3: FAD:protein FMN transferase (apbE2) from Klebsiella pneumoniae (strain 342)
KEGG orthology group: K03734, thiamine biosynthesis lipoprotein (inferred from 92% identity to pva:Pvag_pPag30232)Predicted SEED Role
"Hypothetical similar to thiamin biosynthesis lipoprotein ApbE" in subsystem Sex pheromones in Enterococcus faecalis and other Firmicutes
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (320 amino acids)
>IAI47_20420 FAD:protein FMN transferase (Pantoea sp. MT58) MLTDARVYAYSAVLMGSPILLKLFEDNQTLAAQVFRLIKQQENLFTVNRAASEVMAVNHA AGQHPVVVSQPVFDLIACAHAVSLLPDSLFNLAIGPLVKCWKIGFQGHSVPSETDLQMRM ALTNPHDVILDATSRSVMLARPGMEIDLGAIAKGYIADVVQAFLRQQQVSSALINLGGNV QTVGAPPEEAGWAIGLKKPFGEADELIGVIGVNNRSVVTSGVYERYFELDGICYHHILNP HSGYPLDTELMSVTVISDRSLDGDIYTTLLYGLGVEKGMACLADKPGIEAIFVTRDRQII CSSQRHFSFQLLDTGYRLVH