Protein Info for IAI47_20385 in Pantoea sp. MT58
Annotation: aspartate aminotransferase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 57% identical to DDC_ACIBA: L-2,4-diaminobutyrate decarboxylase (ddc) from Acinetobacter baumannii
KEGG orthology group: K13745, L-2,4-diaminobutyrate decarboxylase [EC: 4.1.1.86] (inferred from 99% identity to pva:Pvag_pPag30241)MetaCyc: 57% identical to diaminobutyrate decarboxylase (Acinetobacter baumannii AYE)
Diaminobutyrate decarboxylase. [EC: 4.1.1.86]
Predicted SEED Role
"L-2,4-diaminobutyrate decarboxylase (EC 4.1.1.86)" (EC 4.1.1.86)
MetaCyc Pathways
- norspermidine biosynthesis (4/6 steps found)
- superpathway of polyamine biosynthesis III (4/8 steps found)
- rhizobactin 1021 biosynthesis (2/7 steps found)
- baumannoferrin biosynthesis (2/11 steps found)
Isozymes
Compare fitness of predicted isozymes for: 4.1.1.86
Use Curated BLAST to search for 4.1.1.86
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (488 amino acids)
>IAI47_20385 aspartate aminotransferase family protein (Pantoea sp. MT58) MSRLNPILAASAQSTEAYQQAIAQSSAAVVKWLEQPEMYQGKTVAELRERITLDFNPQGL GNQAAIERAIEYFLKDSLSVHHPQCVAHLHCPSLVISQAAEVLINATNQSMDSWDQAPSA TLIEMKLIEWLRTQVGYQPGDAGVFTSGGTQSNLMGLMLARDAWFARQGHSVQQDGLTGD LKKIKVFCSENAHFSVQKNMALLGLGYQSVTQVKCDRFARMDMDDLRHKLAVSKANGENI LAIVATAGTTDAGAIDPLREIAALAAEENIWVHVDAAWGGALLLSEKYRDYLDGIELVDS ITLDFHKQFFQTISCGAFLLKEARHYELMRYQAAYLNSEFDEAQGVPNLVSKSLQTTRRF DALKLWMGLEALGQKQYAEIIDHGVTLAQQVAQYVDEQPALELVMKPQLASVLFRYRPAH LAHFSSADIALLNQRIGDALLESGRANVGVTEHDGVTCLKMTLLNPTVTLDDIKVLLTLV ETTAQKLV