Protein Info for IAI47_20015 in Pantoea sp. MT58

Annotation: MsnO8 family LLM class oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 TIGR03558: luciferase family oxidoreductase, group 1" amino acids 5 to 326 (322 residues), 335.8 bits, see alignment E=1.4e-104 PF00296: Bac_luciferase" amino acids 18 to 242 (225 residues), 98.4 bits, see alignment E=2.7e-32

Best Hits

KEGG orthology group: None (inferred from 92% identity to pva:Pvag_pPag30334)

Predicted SEED Role

"Bacterial luciferase family protein YtmO, in cluster with L-cystine ABC transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>IAI47_20015 MsnO8 family LLM class oxidoreductase (Pantoea sp. MT58)
MAYRLSLLDKAPVLQGETPTAALQRTLQLAQLAEEWGYHRFWLAEHHNTAQLASPSPEVL
IAWIVAQTRHIRVGSGGVMLQHYSPYKVAENFNLLASLAPGRIDLGVGKAPGGLPLSTHA
LQQGVDAAKKGSFANQLQLLDSWLTAAQPHVDDEGLAATPLPSRPANRFLLGASEESARL
AASLGWQFVFAAHLNGDRQLLERALSTFSRLSHGQRALVAVQVVVADSPAGADLLVSGLR
HYHVAVKEGPGVNVASLEQAERYVRQGGYKDYKIEPRTPSLLKGTAPQVHAQLDALHHNF
DIDEFVIDTPITEPVARLTSLELLATHHLVAA