Protein Info for IAI47_19990 in Pantoea sp. MT58
Annotation: aspartate aminotransferase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K13745, L-2,4-diaminobutyrate decarboxylase [EC: 4.1.1.86] (inferred from 96% identity to pva:Pvag_pPag30339)Predicted SEED Role
"Siderophore [Alcaligin-like] decarboxylase (EC 4.1.1.-) @ Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase" (EC 4.1.1.-)
MetaCyc Pathways
- norspermidine biosynthesis (4/6 steps found)
- superpathway of polyamine biosynthesis III (4/8 steps found)
- rhizobactin 1021 biosynthesis (2/7 steps found)
- baumannoferrin biosynthesis (2/11 steps found)
KEGG Metabolic Maps
- 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation
- 1- and 2-Methylnaphthalene degradation
- 3-Chloroacrylic acid degradation
- Ascorbate and aldarate metabolism
- Benzoate degradation via hydroxylation
- Biphenyl degradation
- Fluorene degradation
- Phenylalanine metabolism
- Phenylpropanoid biosynthesis
- Purine metabolism
- Pyruvate metabolism
- Tryptophan metabolism
- Tyrosine metabolism
- Ubiquinone and menaquinone biosynthesis
Isozymes
Compare fitness of predicted isozymes for: 4.1.1.-, 4.1.1.86
Use Curated BLAST to search for 4.1.1.- or 4.1.1.86
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (520 amino acids)
>IAI47_19990 aspartate aminotransferase family protein (Pantoea sp. MT58) MLLRSSTQAALDLAPASNASGAETAIFNDQQLAAWSQQTQEVLTLMTRTVTGVEKPFSGI LPHELAAEFSEVNLDHPLGNNEDALAELSQLYLRDAVWFHHPKYLAHLNCPVVLPSLMAE QIMAAVNSSVDTWDQSAGGTLIEQKVIDWTLGRIGLPAGSDGIFTSGGTQSNLMAMLLAR DSWCAAHHPGHLIKHRGLPETASKWRVFTSKLSHFSIQKSMAILGLGYDAVIAVDHDDHY RMDAGCLAQEIARCRSEGLIPIAVVATSGTTDFGSIDPLPEIARLCDDYGLWMHVDAAYG CGLLVSENHRSRLNGIERADSVTVDYHKSFFQTVSCGAFFVRDSQNLKHVTHHADYLNPL SAQQEGTPNLVNKSIQTTRRFDALKMWLTLRVMGPAALGDAFDTLIDLTQAAHQLLTAHP AIEVLHAPELTTQIFRYIPGKHASDAQIDEINAAIRKALFRSGNAVIAGTKVDGRQYLKF TLLNPTTTIADLEDVLSLIAHYGREQVRASALSAANQGAI