Protein Info for IAI47_19360 in Pantoea sp. MT58

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details amino acids 33 to 37 (5 residues), see Phobius details transmembrane" amino acids 31 to 32 (2 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details PF00672: HAMP" amino acids 170 to 220 (51 residues), 31 bits, see alignment 3.9e-11 PF00512: HisKA" amino acids 227 to 274 (48 residues), 30.3 bits, see alignment 5.2e-11 PF02518: HATPase_c" amino acids 326 to 431 (106 residues), 87.1 bits, see alignment E=1.6e-28

Best Hits

KEGG orthology group: None (inferred from 57% identity to pfs:PFLU3654)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (434 amino acids)

>IAI47_19360 HAMP domain-containing protein (Pantoea sp. MT58)
MQWWPKRLASRLMLILLLGLLLANGLTLGLLLLERAQSAKAMMMGNLEYDVATSVAILDR
LPASERAAWATRLDRSNHHYLMHATPLGQPPKTKRLQDTASALTRALGPRYPLSFSVNPD
NSAQMMAHLRLRDGSPLSIDLAPRNMPFARWLPIVLVAQFVLLFGSAWFAVRSAVRPLAD
LTRAAEQLHPDSNKTVRLSEEGPVEVRNAARAFNAMQQRMSAYLKERMQILAAISHDLQT
PITRIRLRSEMMSETDVRSKLLQDLEEMTRLIREGVAYARTSESSDEKPCRIQPHAFIDS
LVCDYQDTGQQVTLQGKLHGSFSTRPHALRRTLSNLIDNALKFAGSAEVVVEQDAGQITI
AVLDRGPGIPPEEMYAVMQPFYRIEHSRNRATGGTGLGLAIAQQLVASLSGELTLTNRRH
GGLRVTVTLPDTLH