Protein Info for IAI47_18890 in Pantoea sp. MT58

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1516 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF00270: DEAD" amino acids 36 to 225 (190 residues), 113.2 bits, see alignment E=2.8e-36 PF04851: ResIII" amino acids 36 to 221 (186 residues), 34.3 bits, see alignment E=5.5e-12 PF00271: Helicase_C" amino acids 293 to 405 (113 residues), 52 bits, see alignment 2e-17 PF08494: DEAD_assoc" amino acids 669 to 857 (189 residues), 212.2 bits, see alignment E=1.7e-66 PF06224: AlkZ-like" amino acids 916 to 1059 (144 residues), 27.9 bits, see alignment E=4.5e-10

Best Hits

Predicted SEED Role

"Probable ATP-dependent helicase lhr (EC 3.6.1.-)" (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1516 amino acids)

>IAI47_18890 ATP-dependent helicase (Pantoea sp. MT58)
MRNTVSMMSKSQSDTVLARFSPATRRWFSGAFAAPTPVQQAAWQAIARGEHALVIAPTGS
GKTLAAFLTAIDTLFQVRTSQPAPTRETTTRILYISPVKALAADVQRNLNLPLAGVYAER
QALNEPEITLNIGMRSGDTPSTERARLLRRPPDILITTPESLFLMLTSKARTTLKGVTTV
IVDEVHAVAGSKRGSQLALSLERLDALLPKPAQRIGLSATVRPVERVAAFLGGCQPVQVV
NPAANRTLHLTIEVPVEDMTDIASADNLTDDVTSASGSIWPHIEARILQQVMAHRATLVF
VNSRGLAEKLTARLNARYLAQQATAEVQDAERTNDDDLIARSHHGSVSKEQRGEIEAALK
QGRLRCVVATSSLELGIDMGPVDLVVQVGAPLSVASALQRVGRAGHQVGGVSTGILFPRT
RRDLLDSAVIIESMRAGQLDALAPPRNPLDILAQQTLAAVAMDPLQADEWYAQVCRADPF
RTLSRRLFDATLDMLAGKFPSDAFAQLRPQLVWDRLSGMLTARPGAQHLAVTSGGTIPDR
GMFSVILPEGEEQAGSRRVGELDEEMVYESRVNDIITLGATSWRIQKITHDQVQVVPAPG
RPARLPFWRGEGVGRSADSGASLGMFLRQLNAASPDDAQQQLHALGLDARAVTNLLTLLA
EQRAATGVVPDDRTLLIERCRDEIVDWRVILHSPWGKRVNAPWALAIAARIQQRMGIDAS
VAASDDGIVARFPASEGHLPAADLFRFDADSLTQEVTQSVGQSALFAARFRECASRALLL
PRRNPGKRSPLWQQRLRAGQLLEVARQFDDFPILIETARECLQDVYDLPALHQLMEKLAL
DQIKMVEVTTEHPSPFAAPLLFGYVAEFIYASDAPQAERRASLLALDSNLLGELLGQTSK
RDLLAPDVVEQVEKELQRFDTRYHAQHAESLIDLLRDLGPLSLADIAARFSGNDTQIKEA
LAQFSAARRIIPVILAGELRWAVIEDAARLRDALSVVLPDDLPATFLVPQAAPLPDLINR
YARTHTLFNAQQLATHFGLGVAVVNEVLFTLLQQGSLLNMGTVADKSETEWVSSDIFKRL
RLRSLQSAREATRPVSPTAWGSLLLERHGLLSAQREELSGTNGLLRVIEQLAGVPLPASL
WESQILRARIVDYQPAMLDELLANGEVIWCGHKALGQSDGLISFHLTEFADETLPVIDTT
QPLTSIQQATIDALSRGGSWFVHEIMAQMENEETHPTEINDALWQLVWQGYVSSDSWIAV
RGLLTTPVMTRSRPTRSLRTRFGQRLSPGALPARRPAVNMLAGRWSRIRRQEITPARLGL
SLAENLLDRYGVITRGCAVSEQIPGGFPALQPVLRGMEDAGRLLRGQFVAGAGGAQFADQ
PTIERLRVLADNPETLTEAVALSALDPANPFGAMLSWPVHASGIRPTRRQGGRVVIAGGA
LILYLTPAGKELLTFSEEPARLQTAVAVLGMALKRDKSASFTLETVDGEPVTQSSLLNAL
RHAGFSRVPQGFSWYS