Protein Info for IAI47_18870 in Pantoea sp. MT58

Annotation: sugar porter family MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 transmembrane" amino acids 24 to 49 (26 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 188 to 212 (25 residues), see Phobius details amino acids 268 to 292 (25 residues), see Phobius details amino acids 307 to 330 (24 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 368 to 392 (25 residues), see Phobius details amino acids 403 to 424 (22 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 23 to 465 (443 residues), 339 bits, see alignment E=2.3e-105 PF00083: Sugar_tr" amino acids 27 to 467 (441 residues), 349.2 bits, see alignment E=5.9e-108 PF07690: MFS_1" amino acids 33 to 413 (381 residues), 113.7 bits, see alignment E=1.4e-36 PF06609: TRI12" amino acids 67 to 197 (131 residues), 24 bits, see alignment E=2e-09

Best Hits

KEGG orthology group: None (inferred from 96% identity to pva:Pvag_pPag30523)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (483 amino acids)

>IAI47_18870 sugar porter family MFS transporter (Pantoea sp. MT58)
MSTNTPDSGEAGDHAPADTVRQRIFLVVLVATMGALAFGYDTGIISGALPYMSSPPGQGG
LGLNSFTEGLVASSLVFGAAIGSFLSGFFSDRFGRRITLRSLAVIFVLGSLGTALAPSVN
IMVAMRFLLGIAVGGGSSTVPVFIAEIAGPRLRAPLVSRNELMIVTGQLIAYVASTLLSY
LLHDEHLWRYMLAIAMVPGFLLFIGTFFVPASPHWLVAEGRLKEAKKILKYLRETPREVR
HEMAQMKKQARAAERGPDAKTLIREKWVIRLMIIGVGLGFVAQFTGVNGFMYYTPIILKS
TGLGTSASIAATIGNGVVSVLATFVGIWAISRFPRRTMLITGLCLVITAQIMLGSVLTFM
SSSVMQSYLALACILMFLFCMQMCISPVYWLMMSELFPMQLRGVLTGGAVSLQWIFNAVV
AFGFPPVMEYAGSTTFFIFAAINVGSLFFVMAMVPETRGKSLEEIESHMKEKFGEKRREA
EAL