Protein Info for IAI47_18610 in Pantoea sp. MT58

Annotation: cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 968 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 928 to 949 (22 residues), see Phobius details PF03170: BcsB" amino acids 254 to 861 (608 residues), 624.4 bits, see alignment E=1e-191

Best Hits

KEGG orthology group: None (inferred from 83% identity to pva:Pvag_3355)

Predicted SEED Role

"Cyclic di-GMP binding protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (968 amino acids)

>IAI47_18610 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB (Pantoea sp. MT58)
MKILTQTLLASLLTAALWLTPAGAETPAVVDNSSSAPLNSPAPTPYGAVSAMQPADAAAS
APVNSSAPTPPDAVSASQPANAAGSAPVTNQAPVSDAAPAAPMNNSATPTAGSAQVTAPV
SGGESATQSVPSAAPATQATESASASAPQSAAPDATPAATTPSYAPAGDTTSASQASATG
EASAPAAAPVTSTGAVTQDSSALSAVPLPQGLSNADPALEAAASALPYAPGQATMPVAEP
QLPITAAINQPISSTISVAQMGQSRGITLTGGQLQSGITFTLPSDEVITNARLNLTLRVS
AALAARNTSLQLMLNGQPLGTLPLGATDSDVSDYELDVPAAMVVSSNNLSFKINDADKLL
CEKESAQQYQVTILPKTSLHLEGQQLNIGTSLRNFPRPFLDPQRMTASTITMGFASNLSP
DAVSAAALVASWLGIQSDYRGIRFPVVRGELPENNGILFGHPGDRIGTLTFPASNGPMLQ
VVDNPNNPVYKLLLVSGNNEEQLRQAANRLTTQPFATDESQLQVPVQTIGNRKPYDAPRW
INTDRPVRLSELLRKDQSLTSSGIWHDALRVNFRAAPDLFLWDGKTVPVNLHYRFPSESW
IDEDNSFLNVMLNGTFLRNLTVNKVGLLENVWHRLGGDARQEQYQLNLEPYLIYGDNQLA
LYFNIKPRADAPCGVLLNNNIKSRIEEDSWIDLSHTRHFSMLPNLSYFVGASFPFSRLAD
FGQTTLLLPETPSNAELSTLLDLAARAGNATGVALTQNQVLFGLPNGGTNMARLQQSDLL
AVSTTGNSAFNQAMLAASPYDATSSTFGVKEPDTLEKLRGWLTGDWSLQQLDADRYFSSN
EAWRGFLSYRSPWNRDRLVVMTVATSDDQLLRLHNDLSSAQINAGIRGDTAIITDENGIR
SFRVGAQFPSGEMPWYMMVVWYANQHSVLLALAAMLLSALVGSAAWVMLKRHAWRRLNPK
QDRDSGRK