Protein Info for IAI47_18605 in Pantoea sp. MT58

Annotation: BCSC C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1271 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13432: TPR_16" amino acids 274 to 329 (56 residues), 28.3 bits, see alignment (E = 5.4e-10) amino acids 350 to 412 (63 residues), 17.6 bits, see alignment 1.1e-06 PF14559: TPR_19" amino acids 466 to 525 (60 residues), 27.5 bits, see alignment 8e-10 PF05420: BCSC_C" amino acids 918 to 1268 (351 residues), 383.6 bits, see alignment E=2.3e-118

Best Hits

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1271 amino acids)

>IAI47_18605 BCSC C-terminal domain-containing protein (Pantoea sp. MT58)
MKNNLLSAGIRKALLLGSALALSPPLLAAESTNPALQALFDQASYWHQKAHDDLAKASLQ
KVLMVEPGNTQALYLLALYSQQGGDNAAAAQYRARLSQVSPNDPHLGELDSARQLQTIPQ
AQLSLARQQARSGNIPAALQTWRNTFSGNEPPPSVAAEYYLTMAGDRTLLPQAVEALRQF
AAQHPQDTGAKLALGKALTYQEQTRREGIEMLSALASGNQDADRSLRQALLWLGPQPSDA
ALYQTWQQRHPQDSAVIDYYRKNVGGAEKGAGFSALNSGDVGGAQASFEKVLGANPQDAD
ALAGMGYVAERAGHYQEAADYLQRAAQLGGDQGASRQQQADDARFYAQLASAQQALKSGD
TAQALTLSEPLVQADGEKGLAARLFRADVLRRTNQPQQAEQIYRSILQSDANNRSAKEGL
FYVLRQQNRNAEASTLLGALPDSVRQSVTPRANEADALRQQAKRQLAAGNNAAAIATLQQ
GVQRYPSDGWLRLDLARLYRQQGDTLLAANVMQPVMRNGASTSELYAGALNASESGGWQQ
ASALLARIPANAKTAAMRELAQRVNFNLQMSTADQYLAQGATAAAANTLKALAVTPPTNP
VDAGNLAQKLAQAGDLTSAVSVVQANLQRGVQGNAGDYAAQMAVLNQAGLGSEAQRFLSN
PELQARSTPTQLAGIRNGYLINEVDRLRQQRQYAVAYDKLIGALQQDPQNRDLMFAMARL
YQDGKMNRDAGVVYDYLMTQDTPTQDARVGAINVALAQNNLQRANELSRGLNTTTQTPDR
LLLLARVAEANGDHSQAMAYLRSARGQLIGLQGAQPGSVPSVGGLALADNPFINRNTSPV
GRSPSSYGTVLPWQAAPVGIATGVTAQGDLAAGSETVSHQSQVLHDVDTMMDSLQEKTGT
WSQGMVQVRGRDGESGLSKLTEAKAPLTFSTVPFETARLDFTATPVSLTAGSGAADAWRR
FGTNALSQGRVVAAGGATVNDLPNGVTDSQTASGVELNLALKGDSYKVDIGSTPLGQDLS
TLVGGVQWSPKLTDFLTLILTGERRAITDSLLSYVGAEDKTSGKRWGRVTKNGANALLSY
DNGDAGFYAGAGAYSYLGENVASNNSLQATAGAYVRPFHSDDRELKVGMSLSWMDFSKNL
SYFSYGQGGYFSPQNYASVSFPIEFSRKFDDLNVNIGGAAGYQTYSQDKSAYFPANASLQ
SELEALAARGSVKDAYYSGSSKNGIGYNLHAGADYKLNKDVTIGGQLGYDTFGDYNESSA
QLYVRYLFGEK