Protein Info for IAI47_17985 in Pantoea sp. MT58

Annotation: YjbH domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 696 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06082: YjbH" amino acids 32 to 689 (658 residues), 862.3 bits, see alignment E=1.7e-263

Best Hits

Swiss-Prot: 72% identical to YJBH_ECOLI: Uncharacterized lipoprotein YjbH (yjbH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_3493)

Predicted SEED Role

"YjbH outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (696 amino acids)

>IAI47_17985 YjbH domain-containing protein (Pantoea sp. MT58)
MKKRYLFSLLAVSVAAACQAQADTFPAPVGPSQSDFGGVGLMQVPTARMSREGEFSLNAR
DNDQYRYYSASLQLFPWLETTVRYTDVRTRQYSAVSEFSGTQSYKDKAFDLKLRLWQEGF
WLPEVAVGTRDLGGTGLFDSEYLVGTKAWGPFDFTLGVGWGYLGNSGTLKNPFCSYSDSY
CQRPKVGEAGSINGSQMFHGPTALFGGVEYQTPWQPLRLKMEYEGNDYQNDFAGRLDQRS
KLNVGAIYRVTDWADINASYERGNTFMFGVTIRTNFNDLRQAHIDSEKPAYNPQPQPKLL
EPTVVGTQLTDLKYNAGLDGPQIQTQGHTLYVSGEQTKYRDTREGVDRANRIIMNHLPDG
IDTISVTESRFNMPQVTTETQVASLRNDLEGYPLGHEQPLQQTRKEPVDPGNTEQGMFIR
KDRLNYSLSPVLNQSVGGPESFYMYQVGVMANADYWLTDHLLVGGSLFGNLANNYDKFNY
NGAPADSSLPRVRTHIRDYVENNVYVNDLQANYMGHLGNGFYGQVYGGYLETMYGGVGGE
LLYRPVDANWAVGVDANYVRQRDWDNMMQFNRYKAATGNLTGYWRPWFMQDVLVKTSVGQ
YLAKDKGVTVDVSKRFDSGVMVGVYATKTNVSSEEYGEGDFTKGFYISIPMDLFTVTPTR
GRAQVNWVPLTRDGGQMLGRKYQLYDLTSDRDARFN