Protein Info for IAI47_17690 in Pantoea sp. MT58

Annotation: PAS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 transmembrane" amino acids 169 to 187 (19 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 13 to 114 (102 residues), 50.6 bits, see alignment E=1e-17 PF00989: PAS" amino acids 18 to 107 (90 residues), 38.8 bits, see alignment E=2.1e-13 PF13426: PAS_9" amino acids 21 to 109 (89 residues), 48.5 bits, see alignment E=2.2e-16 PF08448: PAS_4" amino acids 24 to 119 (96 residues), 30.3 bits, see alignment E=1.1e-10 PF08447: PAS_3" amino acids 31 to 114 (84 residues), 61.7 bits, see alignment E=1.7e-20 PF00015: MCPsignal" amino acids 327 to 482 (156 residues), 167.5 bits, see alignment E=6.7e-53

Best Hits

KEGG orthology group: K03776, aerotaxis receptor (inferred from 96% identity to pva:Pvag_3553)

Predicted SEED Role

"Aerotaxis sensor receptor protein" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>IAI47_17690 PAS domain-containing protein (Pantoea sp. MT58)
MRNNQPVSQREYLFDDHATLMSTTDLNSHITYANDAFIEASGFTADEINGQPHNMVRHPD
MPPEAFADMWATLKQGEPWTALVKNRRKNGDHYWVRANAIPVVRDGKVQGYMSVRTKPTA
EEVRQTEVLYQDFREGRARGRRFHKGLLVRSGWRRPASILKTLPLRWRIRSTLMALLPLS
VAGVWALGMTHTALAGFAAGMAGLLLLCSVWLEQQISRPIERMCKQALRVATGASHQVEQ
MDRVDEVGVTLRAIGQLGLMFRWLVDDVSGQAINVLSASDAIARSNNELSRRTEQAAANV
QQTAATMNEMTATVKSNTETAHEANSLSASTSHAASKGGDVMTDMMGMMGEIADSSTRIA
NITSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAKAASEIKMLVE
TSSSRVKSGNEHASAAGRTMQDIVSQVQNVTALIAQISAATAEQATALSEVSSAVEDLDD
ITHQNAARVTESAEASGRMTHQANRLVEAISVFR