Protein Info for IAI47_17365 in Pantoea sp. MT58

Annotation: type VI secretion system lipoprotein TssJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR03352: type VI secretion lipoprotein, VC_A0113 family" amino acids 15 to 161 (147 residues), 76.5 bits, see alignment E=8.5e-26 PF12790: T6SS-SciN" amino acids 49 to 161 (113 residues), 94.9 bits, see alignment E=1.5e-31

Best Hits

KEGG orthology group: K11906, type VI secretion system protein VasD (inferred from 87% identity to enc:ECL_01819)

Predicted SEED Role

"Probable lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (181 amino acids)

>IAI47_17365 type VI secretion system lipoprotein TssJ (Pantoea sp. MT58)
MLRTHLINPACWLPALLACSLTGCGVTQGITEGTKSAFNALFYKNINVLHLDFTAREALN
TDSRESNSLSEPVVVRVYQLKDRNTFDKTVYQQLLKEGEAILQADLLASRDVVVKPGGDV
SLNMPMEADAQFVAVVGLFRHPDTVNNTWKRVLQREDLDPDKPRILEAGNNHLTLLPFKD
R