Protein Info for IAI47_15915 in Pantoea sp. MT58

Annotation: cell division protein FtsQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 transmembrane" amino acids 26 to 51 (26 residues), see Phobius details PF08478: POTRA_1" amino acids 58 to 127 (70 residues), 76.1 bits, see alignment E=2.2e-25 PF03799: FtsQ_DivIB_C" amino acids 131 to 248 (118 residues), 93.9 bits, see alignment E=1.2e-30

Best Hits

Swiss-Prot: 68% identical to FTSQ_SALTY: Cell division protein FtsQ (ftsQ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K03589, cell division protein FtsQ (inferred from 97% identity to pva:Pvag_0124)

Predicted SEED Role

"Cell division protein FtsQ" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (279 amino acids)

>IAI47_15915 cell division protein FtsQ (Pantoea sp. MT58)
MSQAAMRVRNREPQERIRTGRSNGARLFGIFFLLIVIGIMVAGGLVVLKWMNDASRLPLS
KLVVTGQTHYTTHDDIRQAILSLGPPGTFMSQNVDILQQQVERLPWIKQVSVRKQWPDEL
KIHLVEYTPVARWNDLHMVDAEGNAFSVPASHVGKETLPMLYGPEGSEKEVLAGYHSMDD
VLKARKFTLKVASMTARRSWQLVTSDDVRIELGRSDTMKRLNRFIELYPVLQQQGQNESK
RISYVDLRYDSGASVGWTPVVMEPQDSNQQQNQAQAKQQ