Protein Info for IAI47_15555 in Pantoea sp. MT58

Annotation: CdaR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 PF05651: Diacid_rec" amino acids 6 to 138 (133 residues), 163.8 bits, see alignment E=2.7e-52 PF17853: GGDEF_2" amino acids 147 to 271 (125 residues), 64.3 bits, see alignment E=1.9e-21 PF13556: HTH_30" amino acids 323 to 380 (58 residues), 76.5 bits, see alignment E=1.7e-25

Best Hits

Swiss-Prot: 83% identical to CDAR_ECOLI: Carbohydrate diacid regulator (cdaR) from Escherichia coli (strain K12)

KEGG orthology group: K02647, carbohydrate diacid regulator (inferred from 99% identity to pva:Pvag_0197)

Predicted SEED Role

"Sugar diacid utilization regulator SdaR" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>IAI47_15555 CdaR family transcriptional regulator (Pantoea sp. MT58)
MATYHLDARLAQDIVARTMKIIDSNVNVMDARGRIIGSGDRERIGELHEGALLVLSQGRV
VDIDEAVAKHLHGVRPGINLPLRIDGDIVGVIGLTGEPLTLRHYGELVCMTAEMMLEQAR
LLHMLAQDSRLREELVLNLIRSDTLSPQLTEWAQRLGIDLNQPRVVAVLEVDSGQLGVDS
AMSELQQLQTLLTTPERDNLIAIVSLTEMVVLKPALNGHGRYDQEDHRRRVEQLLQRMKE
SGHLRMRIALGNFFTGPGSIARSYRTARTTMMVGKQRMPELRSYFYQDLVLPVLLDSLRG
GWQANELARPLAKLKSMDNNGLLRRTLIAWFTHNVQPSATARALFIHRNTLEYRLNRISE
LTGLNLGHFDDRLLLYVALQLDEQG