Protein Info for IAI47_15550 in Pantoea sp. MT58

Annotation: DUF3461 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF11944: DUF3461" amino acids 1 to 125 (125 residues), 188 bits, see alignment E=3.1e-60

Best Hits

Swiss-Prot: 91% identical to Y1027_PECAS: UPF0325 protein ECA1027 (ECA1027) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_0198)

Predicted SEED Role

"UPF0325 protein YaeH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>IAI47_15550 DUF3461 family protein (Pantoea sp. MT58)
MYDNLKSLGISNPDDIDRYSLRQEANNDILKIYFRKDKGEFFAKSVKFKYPRQRKTVVAD
HATQGYKEVQEISPNLRYVIDELDQICQRDQVEVDLKRKILDDLRHLESVVSHKITEIES
DLEKLTRNSR