Protein Info for IAI47_14615 in Pantoea sp. MT58

Annotation: SgrR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 PF12793: SgrR_N" amino acids 7 to 119 (113 residues), 102.1 bits, see alignment E=2.4e-33 PF00496: SBP_bac_5" amino acids 162 to 301 (140 residues), 52 bits, see alignment E=6.1e-18

Best Hits

KEGG orthology group: None (inferred from 89% identity to pva:Pvag_0385)

Predicted SEED Role

"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) or Sex pheromones in Enterococcus faecalis and other Firmicutes (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>IAI47_14615 SgrR family transcriptional regulator (Pantoea sp. MT58)
MRQLNRLNQFQRLWQQSLGASQQTCVAEMARHCICSERHLRTLLSQWQHAGWLRWHGEPG
RGKQGKLTFLQTPEQLRQQLLQRQLDAGEAADALQLLDLAPERLINMLRPLMGGQWQNDT
PVLRIPYYRPMESTEPRQIAGRAEQHLVRQIYSGLTRFEQDEPVGDLAHHWQHDEASCSW
LFWLRPQLMWHNDEPVQAAQLVTQFRQLLHDTRVRVLLADVISVDAPHPLALRFILRRPD
FWLPHRLAHLLCLLPHPDDAVIGSGPWKLAHFSPELVRIESHSRWHLQRPLLQAVEYWIT
PQLFDPALGSSCRHPVQIAIGDANELRTLQPVSSSISLGFCYLVCRPRAGFTRDQARTLF
QLIQQSGIVSRLPLDEGLITPSSELLPGWDVPRINRVPVPLPATLTLHYQLPVELHQMSQ
ALVALLKRHGCSLNVVFHPVKNWHRIEQLDEADIVMGDRLIGDAPVFTLANWLQSDPLWR
PLWVTPEGEDVQAQLLAIQQIADSNIRTHTLHQLYHQLMMKGILLPLFNYRYQIHAPPGV
EGIELNTLGWFDFSRAWIPPPIDPPCSCSAAD