Protein Info for IAI47_14570 in Pantoea sp. MT58

Annotation: YbaY family lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF09619: YscW" amino acids 44 to 145 (102 residues), 126.6 bits, see alignment E=2.7e-41

Best Hits

Swiss-Prot: 68% identical to YBAY_ECOLI: Uncharacterized lipoprotein YbaY (ybaY) from Escherichia coli (strain K12)

KEGG orthology group: K09914, putative lipoprotein (inferred from 97% identity to pva:Pvag_0394)

Predicted SEED Role

"Glycoprotein-polysaccharide metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>IAI47_14570 YbaY family lipoprotein (Pantoea sp. MT58)
MKLRHVCSGVIMALAVAGCADKSKPVPTPTLGSAVAGQTAAIAQPNVSGSVFIRQRIALP
PDAVLTVTLSDASVSDAPSKVLSQRVVRTEGKQAPFQFVLPFNPADIQPNARILLSAAIS
IDGKLAFVTEGVKPVINQGGTKAELLLVPVPSMAMPTQPGAATTVPSTSPTQVTPSAAVP
APTHI