Protein Info for IAI47_14465 in Pantoea sp. MT58

Annotation: recombination protein RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 TIGR00615: recombination protein RecR" amino acids 2 to 197 (196 residues), 266.9 bits, see alignment E=4.4e-84 PF21176: RecR_HhH" amino acids 7 to 51 (45 residues), 82.4 bits, see alignment 4.1e-27 PF02132: RecR_ZnF" amino acids 54 to 74 (21 residues), 29.2 bits, see alignment (E = 1.5e-10) PF13662: Toprim_4" amino acids 81 to 172 (92 residues), 88.9 bits, see alignment E=5.1e-29 PF01751: Toprim" amino acids 82 to 164 (83 residues), 53.9 bits, see alignment E=4.2e-18 PF21175: RecR_C" amino acids 174 to 197 (24 residues), 52.2 bits, see alignment (E = 8.5e-18)

Best Hits

Swiss-Prot: 95% identical to RECR_ERWT9: Recombination protein RecR (recR) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)

KEGG orthology group: K06187, recombination protein RecR (inferred from 100% identity to pva:Pvag_0413)

MetaCyc: 89% identical to recombination mediator protein RecR (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"Recombination protein RecR" in subsystem DNA-replication or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>IAI47_14465 recombination protein RecR (Pantoea sp. MT58)
MQTSPLLESLMESLRCLPGVGPKSAQRMAFQLLQRDRSGGMRLAQALTRAMSEIGHCADC
RTFTEQEICTICANPRRQQNGQICVVESPADIHAIEQTGQFGGRYFVLMGHLSPLDGIGP
ADIGLDRLEQRLESETLQEVILATNPTVEGEATANYIAELCGQYGVDASRIAHGVPVGGE
LEMVDGTTLSHSLAGRQKFKF