Protein Info for IAI47_14450 in Pantoea sp. MT58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 transmembrane" amino acids 33 to 51 (19 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details PF19488: DUF6024" amino acids 12 to 272 (261 residues), 171 bits, see alignment E=1.8e-54

Best Hits

Predicted SEED Role

"FIG00633994: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (294 amino acids)

>IAI47_14450 hypothetical protein (Pantoea sp. MT58)
MAHSPLSSETSAEARHRLRLALSRFYRLEQFDLFFAPSLHVAQVLLSQLFLRQEQARNQQ
RYASRYPITELSNLPAIPLIAGSIMLVPHIELPNGRVRPLQDCQNQGVTEASESFASVLH
QRLIDESHLFVTRLDRHAEICSDLVLVALRTHDFSTLVRSELRLFEQGLTLNATYEALRR
FDDPLWRPYNAATVDALSLSSPLPLNSCHQPGLPFASFNVPASLISALSDADDVVKWPQL
ARLQLNANVRGSGKKSVNMTHHLSRRLQFLLSAGGKSEKASVRPGGSGSGPESR