Protein Info for IAI47_14385 in Pantoea sp. MT58

Annotation: SPFH/Band 7/PHB domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01145: Band_7" amino acids 21 to 203 (183 residues), 134.4 bits, see alignment E=2.3e-43

Best Hits

Swiss-Prot: 85% identical to QMCA_SHIFL: Protein QmcA (qmcA) from Shigella flexneri

KEGG orthology group: None (inferred from 99% identity to pva:Pvag_0428)

Predicted SEED Role

"Putative stomatin/prohibitin-family membrane protease subunit YbbK" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>IAI47_14385 SPFH/Band 7/PHB domain protein (Pantoea sp. MT58)
MITVIPALIILALVAVWATVKIVPQGFQWTVERFGRYTCTLQPGLSLVVPFMDRVGRKIN
MMEQVLDIPSQEIISKDNANVTIDAVCFIQVVDPARAAYEVSNLEQAILNLTMTNMRTVL
GSMELDEMLSQRDSINTRLLHIVDEATNPWGVKITRIEIRDVRPPQELIGAMNAQMKAER
TKRADILTAEGVRQAAILRAEGEKQSQILKAEGERTSAFLQAEARERQAEAEANATKMVS
EAIAAGDIQAINYFVAQKYTDALQKIGEGNNSKVVMMPLEASSLLGSIAGIGELLKDSRT
ESKR