Protein Info for IAI47_14225 in Pantoea sp. MT58

Annotation: type VI secretion protein IcmF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1145 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 53 (21 residues), see Phobius details amino acids 102 to 119 (18 residues), see Phobius details amino acids 394 to 416 (23 residues), see Phobius details PF14331: IcmF-related_N" amino acids 183 to 351 (169 residues), 86 bits, see alignment E=1.4e-28

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1145 amino acids)

>IAI47_14225 type VI secretion protein IcmF (Pantoea sp. MT58)
MLKKIIPVIIWAVLLCILFIFCLFLSVWMEISLVYAIVLWFFFIFSVCLVSLLRKSLSAL
QKQDYFQKLFSRHVFSRTERILYTHWRSGVRRLKKAKRINKVYPWFFITAAGNSHSTLLS
GSEMMPASGCRENREITPARTLRWWFFQPLSFLELPGLFSESGCVKKVWKRTASWFHAAP
PPAGVVVCISVTELLNLRDEPPVIRGRRIRACLEPLLNKTRRRLPVYVLVTECENIPGFS
RWISALSSEQQHQPLGYFWLTPPAIDSRDPSFLSPLFDAMREGLNNVRISMFSGAKPDAD
TLFLLDMPEQMQSLQPVLHQYIASICGDDVSSDSTVPALGGIWFTATEPVSNTSNERKSY
FTGELFSRTLPFISSNSKILYTCPVRGFLSRWGTLFIASIVTFLLLISATMTFHVVDTDK
SSDVISSLSQLESIDAALQHPVRYLPFISVLYSRQAEIEDRILSYSVIHYQDDREVISRY
HQDFKLAVPEKQRELILELARAVVAKESLLNGNALASSSGKSPISPALTMMTSDISLTPR
QSLLLQRALLLRNGGEQQISRLRRLLGELVSDDPQWRWLLASTQQISPVRSGSFFPGSGD
KVSIDGIWTAEGTQQIYRWLKEIHYAAGKKIDLPALARFEQRLPALRQSAWIKFIIQLNR
LPVSDLSEQQWSDILLNIAQGNSPATGLARMVNQQLADISHADASPWLLQLRKLVELQTN
SVSGTLVRQFSQRKQELDFVFGEWLKKGKGAQVITDAGLQAQSWTDWQSSLHSAVSDALN
SPSDTPLLTSGLFAPVQGNENNPLPALSKRFTALRKNLISVTPDAGVDAVWTLYGQDKKL
IIAHAMQQSGCWLQHQWQSTVLWPLEQNARRIDYPAQQALAHQYISSFMRDSAKHVLAIG
KNGAEAGKFEGQHIKLSQSFISLINAELNPDDLLPMPERDKTRKDDKLALLRAQQKSLED
KQKQLESTPRELSLHSLPATVPGGAGLMPVGTKLTLFCDDQRWVLKSMNFDEQALFRWRP
GHCGRVAQLIQFPGFSLEYNYTGESAWPDFLNDIAEGQHTYQAEDFSDQAALLRAQGIKQ
IMVRYQPASQADVQETWRQWQALEHALDENNSAQQASLIQSGDGRFSEPQKHLLSRLPAK
IASCP