Protein Info for IAI47_14220 in Pantoea sp. MT58

Annotation: type VI secretion system ATPase TssH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 15 to 824 (810 residues), 1034.4 bits, see alignment E=0 PF02861: Clp_N" amino acids 23 to 72 (50 residues), 21.3 bits, see alignment 1.1e-07 PF00004: AAA" amino acids 216 to 347 (132 residues), 41.6 bits, see alignment E=7.7e-14 amino acids 584 to 707 (124 residues), 29.8 bits, see alignment E=3.3e-10 PF17871: AAA_lid_9" amino acids 356 to 445 (90 residues), 87.2 bits, see alignment E=2.9e-28 PF07724: AAA_2" amino acids 578 to 742 (165 residues), 175.6 bits, see alignment E=4.1e-55 PF07728: AAA_5" amino acids 583 to 704 (122 residues), 36.7 bits, see alignment E=1.9e-12 PF10431: ClpB_D2-small" amino acids 749 to 823 (75 residues), 32.8 bits, see alignment E=2.6e-11

Best Hits

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (850 amino acids)

>IAI47_14220 type VI secretion system ATPase TssH (Pantoea sp. MT58)
MSQYLKKITEVFSADARYCLNAAVSQAVSRTHHEVSVEHLLLALITTQTVLLEQLCLGAG
LRGDQLADALTHSLNQQRSGNTCGPVLSESLVRHLEKAWLHASICWHQRHLPATAFIGCL
LADPDDVTLPLPTEVRQALHCDVLKADALMAEYSGTGQKKDNTEEGVPSGGPALLKYTHN
LTQKARRGELDPATGRENEIRQMIDVLLRRRQNNPILTGEPGVGKTALVEGLAQRIVSGT
VPDALKKMDIMSLDLSLLQAGASVKGEFENRLQSLLCDIQSHPVPIILFIDEAHMLVGAG
GTAGQNDAANLLKPALARGELRMIGATTWSEYKKYFEKDAALARRFQIVRVTEPDRDTAI
NMLRSIVPAISSHHGIPVPDSAIVAAVEFSARYLPGRQLPDKSVTLLDTACARVALSQSD
EPREIEDLNVMLRNISLERRSLSLDSGCATRIAWLDQRKAEIKQDLTILTPVWKEQQSLV
ARIAQCQNSEQQASLRQKLSVMHKQQPMVFERVDAACVAEIIAGWTGIPVEQILEQKQGP
LNTLYERLCERVTGQSHALEAIVRQIRTSRAGLADPLKPMGVFMLAGPSGTGKTETALAL
AEMLYGGSRGLITLNMSEYQEAHSVAGLKGSPPGYVGYGQGGVLTEAVRRQPYSVVLIDE
VEKAHRDVIELFYQVFDKGVMEDSEGQTIDFRNTFIILTSNLADDVIMAAGEKESPDINA
LVRQIRPEFSRVFPAAFMGRLTLLPYLPLSAQALNNIINAKLRKISLRFSGRDGEKRSLS
YSPAVVRYIADRCHVRQSGARDVDTVINQSLLPLVTDYLLEADGSGNLHILVQVTGKDLA
IVTDRQSKRK