Protein Info for IAI47_14150 in Pantoea sp. MT58

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 29 to 49 (21 residues), see Phobius details amino acids 60 to 85 (26 residues), see Phobius details amino acids 150 to 176 (27 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 239 to 269 (31 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 318 to 343 (26 residues), see Phobius details PF01594: AI-2E_transport" amino acids 10 to 339 (330 residues), 172.9 bits, see alignment E=5.4e-55

Best Hits

KEGG orthology group: None (inferred from 92% identity to pva:Pvag_0459)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>IAI47_14150 AI-2E family transporter (Pantoea sp. MT58)
MRFKGLNIGFFILILAIATVAFFDVLSPYFSSILWAAILAVIFHPLKTWFRNRLGDRNGV
AALITLLCICLIVFTPLAIIASSLVVETNAVYHKLQTNSSQFPVVFADLLQHLPRWAKHF
LAENNLDNAGQIQQKLSSFALKGGQYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGS
YLVHLILEALPLSTYVKHHLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLL
WGALMAFLSLIPAVGSAIIWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVG
KDTKMPDYMILIATLGGMEIYGINGFVIGPVIAALFIACWNLLSGRDNRENIEAIDEEFI
EEGKKQSDDAAEAAAEAAAEAAAASAEAAAETESKVSALVASQREKAALNKP