Protein Info for IAI47_13790 in Pantoea sp. MT58

Annotation: DUF969 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 27 to 48 (22 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details PF06149: DUF969" amino acids 8 to 224 (217 residues), 300.5 bits, see alignment E=3.3e-94

Best Hits

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_0539)

Predicted SEED Role

"FIG015373: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>IAI47_13790 DUF969 domain-containing protein (Pantoea sp. MT58)
METAVNLWPLLGIAAIIVGFVLRFNPVLVVIVAGFVTGLAAMMPLADILEKLGAGFLNTR
NLPLILLLPLAVIGLLERHGLKERAQAWIAQIKTATAGRLLIVYLFVREITAALGLTSLG
GHPQMVRPLLAPMAEGATENRYGEISPELRHKLRAMSAATDNVGLFFGEDIFVAFGAIIF
MHNFMQASAGIQTEPLHIALWGIPTAVAAFLIHSARLVRLDRQLARELQQLNSQALKAKG
GQ