Protein Info for IAI47_13675 in Pantoea sp. MT58

Annotation: cell division protein CpoB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF16331: TolA_bind_tri" amino acids 37 to 110 (74 residues), 71.8 bits, see alignment E=1.6e-23 TIGR02795: tol-pal system protein YbgF" amino acids 144 to 261 (118 residues), 139.7 bits, see alignment E=3.3e-45 PF13174: TPR_6" amino acids 147 to 177 (31 residues), 19.7 bits, see alignment 3.9e-07 amino acids 183 to 214 (32 residues), 25.5 bits, see alignment 5.6e-09 amino acids 219 to 251 (33 residues), 31.8 bits, see alignment 5.8e-11 PF13525: YfiO" amino acids 153 to 262 (110 residues), 39.9 bits, see alignment E=1.7e-13 PF13432: TPR_16" amino acids 157 to 215 (59 residues), 36.9 bits, see alignment E=1.7e-12 amino acids 199 to 250 (52 residues), 20.4 bits, see alignment E=2.5e-07 PF13181: TPR_8" amino acids 218 to 250 (33 residues), 16.4 bits, see alignment 3.2e-06

Best Hits

Swiss-Prot: 68% identical to CPOB_ECOLI: Cell division coordinator CpoB (cpoB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_0562)

MetaCyc: 68% identical to cell division coordinator CpoB (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>IAI47_13675 cell division protein CpoB (Pantoea sp. MT58)
MVSNFRRHLLSLSLLIGVAAPWAANAQASISSVGSGSVEDRVTTLERISNAQAQLMQQLQ
QQMSDNQRDIDALRGQIQQNTYQLNQVVERQKQLYQQIDTLSSASSNGGQQAAGSDAAAD
TGAAATAGAAASTESAPAQTGDANSDYNAAVALILEKKQYDQAISALQAWVKRYPDSTYQ
PNANYWLGQLNYNKGKKDDAAYYYATVVKNYPKSPKAAEALLKVGVIMQEKKDTAKAKAV
FQQVIKLYPDTESAKQAQKRLSGL