Protein Info for IAI47_13010 in Pantoea sp. MT58

Annotation: arginine ABC transporter permease ArtM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 187 to 211 (25 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 5 to 110 (106 residues), 53.4 bits, see alignment E=1.5e-18 PF00528: BPD_transp_1" amino acids 34 to 214 (181 residues), 61 bits, see alignment E=6.4e-21

Best Hits

Swiss-Prot: 82% identical to ARTM_ECOLI: Arginine ABC transporter permease protein ArtM (artM) from Escherichia coli (strain K12)

KEGG orthology group: K09998, arginine transport system permease protein (inferred from 98% identity to pva:Pvag_0703)

MetaCyc: 82% identical to L-arginine ABC transporter membrane subunit ArtM (Escherichia coli K-12 substr. MG1655)
ABC-4-RXN [EC: 7.4.2.1]

Predicted SEED Role

"Arginine ABC transporter, permease protein ArtM" in subsystem Arginine and Ornithine Degradation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>IAI47_13010 arginine ABC transporter permease ArtM (Pantoea sp. MT58)
MLAYLPELLKGLHTSLTLTAASLVVALLLALIFTVVLSLKTPVFNPLVKGFITLFTGTPL
LVQIFLIYYGPGQFPSIQQIPWLWHLLSQPWLCAMLALSLNSAAYTTQLFYGAVRAIPSG
QWQSCAALGMGRKDTLRILLPYAFKRALSSYSNEVVLVFKGTSLAYTITLMEVMGHGQLL
YGRTYDITVYAAAGLIYLCVNGLLTLMMRLIERRALAFERRN