Protein Info for IAI47_12910 in Pantoea sp. MT58

Annotation: DNA translocase FtsK 4TM domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1176 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 75 to 98 (24 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details PF13491: FtsK_4TM" amino acids 20 to 191 (172 residues), 157.9 bits, see alignment E=4.1e-50 PF17854: FtsK_alpha" amino acids 687 to 787 (101 residues), 99.8 bits, see alignment E=1.8e-32 PF01580: FtsK_SpoIIIE" amino acids 795 to 1008 (214 residues), 278 bits, see alignment E=1e-86 PF09397: FtsK_gamma" amino acids 1110 to 1169 (60 residues), 92.6 bits, see alignment 2e-30

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1176 amino acids)

>IAI47_12910 DNA translocase FtsK 4TM domain-containing protein (Pantoea sp. MT58)
MSQEYTEDKDVSLQSLSSGRRLLEALLILVALFAIYLMVSLVSFNPSDPSWSQTAWHEPI
HNIGGSVGAWLADTLLFIFGVMAYAIPPVILGLCWIAFRQRDSQDYFDYFAVGLRLIGVL
ALVVTTCGMAALNADDIWYFASGGVIGSLVSNAIAPWFSPAGGTLMLLCVWAAGITLYTG
WSWLTIAERIGGVVMGVLTFASNRSRHDEPWQEEDDEQDAHEYADVPELHAADQDEDEDV
LLSAPRAAAQPAASQPDPLLAKAAAATSAAVAATAEAAEVTLAPAAPVTPAAVAASSAAA
SAPAAMPASPTAQPAPAAVQSAPASYGAATAPTPAQSASAPATSPPLYHFEMPDEAPAAP
SFSAYDDDEPKMGNWRDTPAMPAAPAAAAAVAATAAQATTRTAPVFDLAPETNPNPQVKQ
GIGPALPRPNPVKLPTRRELASYGIKLPSQRMAEEKAKTEESETAPAGSVSAAPDAEEAL
QQAELRQAFQSEQQQRYGTSWQQDEEDEQDAQHQDALARQFAEQQQQRYEPEVKKDPVFN
IDTASAFDFSPMKDLVDDGPSEPLFTIAATPEPEAPAVSHEPWQQVSEVSQPQAPAQVPA
PDRFIPAESDYSTPAASSEPVYAAPSAPAYGAPVASQAPAYSAPAYGSPAAVPAQPVEEA
KPSLHDSLIHPFLMRHEQPLEKPSTPLPSLDLLTAPPEEEEPVDMFSLEQTARLVESRLG
DYRVKAEVVGISPGPVITRFELDLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPY
VGLELPNKHRQTVYLREVLDCPKFRDNPSPLAVVLGKDIAGQPVVADLAKMPHLLVAGTT
GSGKSVGVNAMIISMLYKATPEEVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANAL
RWSVGEMERRYKLMSALGVRNLAGYNEKVEQAEAMGRPIPDPFWKPGDSMDMTPPVLEKL
PYIVVMVDEFADLIMAVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIP
TRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYMPPNSSLPIRVHGAFVRDQEVHAVVQD
WKARGRPQYIDSITAGEESESAGGIDSDEELDPLFDQAVGFVVDKRRASISGVQRQFRIG
YNRAARIIEQMEAQGIVSAPGHNGNREVLSPPPHDM