Protein Info for IAI47_12580 in Pantoea sp. MT58

Annotation: FtsH protease modulator YccA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 74 to 97 (24 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 190 to 214 (25 residues), see Phobius details PF01027: Bax1-I" amino acids 17 to 211 (195 residues), 153.7 bits, see alignment E=3e-49

Best Hits

Swiss-Prot: 82% identical to YCCA_ECOLI: Modulator of FtsH protease YccA (yccA) from Escherichia coli (strain K12)

KEGG orthology group: K06890, (no description) (inferred from 100% identity to pva:Pvag_0792)

Predicted SEED Role

"Putative TEGT family carrier/transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>IAI47_12580 FtsH protease modulator YccA (Pantoea sp. MT58)
MERIVTSSQSSLLSTHRVLRNTYFLLGLTLAFSAVTATASTLLALPAPGLILMLVGFYGL
MFLTYRLANSPMGILAAFAFTGFLGYCLGPILSSFLTAGMGDVIALALGGTALVFFCCSA
YVLTTRRDMSFLGGMMMAGFVVLLVAVVANIFLQLPALHLAISALFILFSAGAILWETSN
IIHGGETNYIRATVSLYVSLYNIFVSLLSLLGFARSN