Protein Info for IAI47_12520 in Pantoea sp. MT58

Annotation: pyrimidine utilization protein C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 TIGR03610: pyrimidine utilization protein C" amino acids 1 to 127 (127 residues), 252 bits, see alignment E=5e-80 PF01042: Ribonuc_L-PSP" amino acids 14 to 125 (112 residues), 113.9 bits, see alignment E=2.4e-37

Best Hits

Swiss-Prot: 88% identical to RUTC_KLEP3: Putative aminoacrylate peracid reductase RutC (rutC) from Klebsiella pneumoniae (strain 342)

KEGG orthology group: K09021, UPF0076 protein RutC (inferred from 97% identity to pva:Pvag_0803)

MetaCyc: 78% identical to 3-aminoacrylate deaminase (Escherichia coli K-12 substr. MG1655)
RXN0-6452

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>IAI47_12520 pyrimidine utilization protein C (Pantoea sp. MT58)
MPKSIIVPPGTTTPIAPFVPGTLADGVVYVSGTLPFDGDNNVVHVGDAAAQTRHVLDTIK
KVIETAGGSMADVTFNSIFITDWSNYAAVNEVYAEYFPGEKPARFCIQCGLVKPDALIEI
ASVAHIGKPEV