Protein Info for IAI47_12510 in Pantoea sp. MT58
Annotation: pyrimidine utilization protein A
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 86% identical to RUTA_KLEP7: Pyrimidine monooxygenase RutA (rutA) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
KEGG orthology group: K09018, putative monooxygenase RutA [EC: 1.14.-.-] (inferred from 99% identity to pva:Pvag_0805)MetaCyc: 86% identical to pyrimidine monooxygenase RutA (Escherichia coli K-12 substr. MG1655)
RXN-12886 [EC: 1.14.99.46]; 1.14.99.46 [EC: 1.14.99.46]
Predicted SEED Role
"Predicted monooxygenase RutA in novel pyrimidine catabolism pathway" in subsystem Pyrimidine utilization
MetaCyc Pathways
- uracil degradation III (5/5 steps found)
KEGG Metabolic Maps
- 1,4-Dichlorobenzene degradation
- Ascorbate and aldarate metabolism
- Benzoxazinone biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of steroids
- Biosynthesis of terpenoids and steroids
- Brassinosteroid biosynthesis
- Carotenoid biosynthesis - General
- Diterpenoid biosynthesis
- Limonene and pinene degradation
- Naphthalene and anthracene degradation
- Phenylpropanoid biosynthesis
- Sphingolipid metabolism
- Tryptophan metabolism
- Ubiquinone and menaquinone biosynthesis
- gamma-Hexachlorocyclohexane degradation
Isozymes
Compare fitness of predicted isozymes for: 1.14.-.-
Use Curated BLAST to search for 1.14.-.- or 1.14.99.46
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (363 amino acids)
>IAI47_12510 pyrimidine utilization protein A (Pantoea sp. MT58) MKIGVFIPIGNNGWLISSNAPQYMPTFELNKAIVLKAEHYHFDFALSMIKLRGFGGKTEF WDHNLESFTLMAGLAAVTSRIEIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGW QKPEYEQMGMWPGDEYFGSRYSYLTEYVTVLRDLWGTGKSDFKGEFFTMNDCRVSPQPQR PMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPSAFSSTSIRMKQAAEKAGRDVGSYVL FMIIAAETDEEARAKWEHYKAGADEEALSWLTTQSQQDTKSGSDTNVRQMADPTSAVNIN MGTLVGSYANVARMLDEVAQVEGTHGVLLTFDDFLEGIENFGQHIQPLMTCRSALLDAQQ EVA