Protein Info for IAI47_12340 in Pantoea sp. MT58

Annotation: outer membrane lipoprotein carrier protein LolA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF19574: LolA_3" amino acids 13 to 181 (169 residues), 45.8 bits, see alignment E=4.6e-16 PF03548: LolA" amino acids 34 to 185 (152 residues), 42.2 bits, see alignment E=7.3e-15

Best Hits

KEGG orthology group: None (inferred from 94% identity to pva:Pvag_0841)

Predicted SEED Role

"FIG027190: Putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>IAI47_12340 outer membrane lipoprotein carrier protein LolA (Pantoea sp. MT58)
MLKIVLTGLLLWASAASAVTLDQLQQRFASQPVIRADFTQTRTISGMRQPLVSHGQMLIA
REQGLWWHQQTPFVMTLLLDDKRMVQSLNGQKPQVITADSNPQMFQFNHLLRALFQADQK
VLNENFSVAFSDRGNGAWTLDLTPKAAPLNKIFNRISLAGNTFLDSINLDDKQGDKTEIQ
LSNTRIEPPQLSDEEQARFAGP