Protein Info for IAI47_12270 in Pantoea sp. MT58

Annotation: YceK/YidQ family lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 79 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07119: DUF1375" amino acids 53 to 72 (20 residues), 25.9 bits, see alignment E=4.7e-10

Best Hits

Swiss-Prot: 80% identical to YCEK_ECO57: Uncharacterized protein YceK (yceK) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 91% identity to pva:Pvag_0855)

Predicted SEED Role

"Putative outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (79 amino acids)

>IAI47_12270 YceK/YidQ family lipoprotein (Pantoea sp. MT58)
MKAFLKAGVVVAAVLCLSGCGSIISRTLPGQGHGNQYYPGVQWDVRDSGWRVLTILDLPL
SLVVDTLLLPVDASHGPYE