Protein Info for IAI47_12210 in Pantoea sp. MT58

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07273: DUF1439" amino acids 28 to 179 (152 residues), 174 bits, see alignment E=9.5e-56

Best Hits

Swiss-Prot: 65% identical to YCEB_SALTY: Uncharacterized lipoprotein YceB (yceB) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_0866)

Predicted SEED Role

"Putative lipoprotein yceB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>IAI47_12210 lipoprotein (Pantoea sp. MT58)
MKKAFFGLTALLIALLVSGCNQLTQYTISEQEVNQALQKHNNYEKDIGVSGLVNAHIVLN
NLTSQIGREEPGKVTLSGNAKINVTSLFGPQQADMQLKMRAQPVYEPQQGAIYLRDLEIV
DTQVAPEKMASIMKTLTPYLNQSLKSYFDQNPAYVLSADRSKGESLAKKFAKGLEVKPGE
LVIPFTQ