Protein Info for IAI47_12155 in Pantoea sp. MT58

Annotation: flagellar hook assembly protein FlgD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 PF03963: FlgD" amino acids 17 to 78 (62 residues), 78.8 bits, see alignment E=4.3e-26 PF13861: FLgD_tudor" amino acids 87 to 221 (135 residues), 54.7 bits, see alignment E=1.4e-18 PF13860: FlgD_ig" amino acids 112 to 181 (70 residues), 74.3 bits, see alignment E=9.6e-25

Best Hits

Swiss-Prot: 63% identical to FLGD_ECOLI: Basal-body rod modification protein FlgD (flgD) from Escherichia coli (strain K12)

KEGG orthology group: K02389, flagellar basal-body rod modification protein FlgD (inferred from 96% identity to pva:Pvag_0877)

Predicted SEED Role

"Flagellar basal-body rod modification protein FlgD" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>IAI47_12155 flagellar hook assembly protein FlgD (Pantoea sp. MT58)
MAIAVGVNDKLDPTVLSSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQ
LAQINTLSGIEKLNTTLGSISGQINTSQSLQSSTLIGHGVMVNGGQILVGKGTTTPFGVE
LASASTGATATITDANGSVINTVDLGALSAGVHTFSWDGKLTDGSVAPDGKYSVAIAASN
GNTQLVAQPLNYAYVNGVSTANNTTKLDLGTMGSATLDDVRQIL