Protein Info for IAI47_11685 in Pantoea sp. MT58

Annotation: DotU family type VI secretion system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 132 to 150 (19 residues), see Phobius details amino acids 200 to 220 (21 residues), see Phobius details TIGR03349: type IV/VI secretion system protein, DotU family" amino acids 19 to 227 (209 residues), 233.9 bits, see alignment E=1.7e-73 PF09850: DotU" amino acids 21 to 222 (202 residues), 242.7 bits, see alignment E=2.9e-76 TIGR03350: type VI secretion system peptidoglycan-associated domain" amino acids 258 to 392 (135 residues), 161.7 bits, see alignment E=9.5e-52 PF00691: OmpA" amino acids 290 to 387 (98 residues), 55.2 bits, see alignment E=7.6e-19

Best Hits

KEGG orthology group: K11892, type VI secretion system protein ImpK (inferred from 96% identity to pva:Pvag_1024)

Predicted SEED Role

"Outer membrane protein ImpK/VasF, OmpA/MotB domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>IAI47_11685 DotU family type VI secretion system protein (Pantoea sp. MT58)
MQEQQKSHSDLAPDASHQNVLVAAANPLINAIPQIRHSVSHDDPAQLRQQLIDQIRRFEL
SCQQSGLGYEVIIGARYCLCTALDEAAALTPWGSRGVWTSNGLLVTFHNETWGGEKFFQL
LAKLSQNPRRHILMLELIYFCLLLGFEGRYRVLDNGRSQLETIKQRLLQMIRSVRGNYAT
ALSPHPTDQPVLRKLWRPMIPLWACAAVAGLAACLFYIVLNWRLGDYTSPVLARIYQTAL
PEVKIGNPAPPPPATLDLRGFLKPEIDAGLVAVRDEADRSVVTLKGDGLFASAATDVRGR
YVDVIQRIAAAMNNVSGQIQVIGYSDNVPIRSARFGSNFELSLARARSVQSLLQQQLADP
SRVKAEGRGESNPLVPNNSAENRARNRRVEITLLVAPDATHAELNGLARGN